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The Ahmed-Braimah Lab seeks a Research Analyst (RA) to support a diverse portfolio of research projects focused on evolutionary and functional genomics. They will work closely with the Principal Investigator, graduate students, postdocs, and collaborating laboratories to manage, analyze, and interpret large-scale genomic and transcriptomic datasets. The RA will apply established analytical tools, develop custom pipelines, and create new computational approaches to address cutting-edge biological questions.
Projects involve whole-genome and resequencing analyses, RNA-Seq and single-cell omics, population genomics, regulatory genomics (ATAC-Seq, ChIP-Seq, CUT&RUN), comparative genomics, genome assembly and annotation, CRISPR screens, and computational workflows for evolutionary and functional analyses. This position requires a strong computational background, demonstrated experience with next-generation sequencing analysis, and enthusiasm for collaborative work is preferred. Excellent communication skills and a desire to train junior scientists are essential, as the position includes mentorship and teaching responsibilities.
This position is part of a bargaining unit and is represented by the union SEIU, Local 200United.
Education and Experience:
M.S. in computer science or a related field, or a Ph.D. in biology with extensive graduate training in computational biology or an equivalent field, as evidenced in published work and/or CV.
Proficiency with scripting languages (e.g., Python, R, Bash).
Experience working in Linux/Unix environments and with HPC or cloud computing.
Strong organizational skills and the ability to manage multiple concurrent projects.
Effective communication skills and interest in working in a collaborative, interdisciplinary team.
Experience with workflow managers such as Snakemake, Nextflow, or WDL/Cromwell.
Familiarity with version control (Git/GitHub) and collaborative software development.
Background in evolutionary genetics, population genomics, or comparative genomics.
Experience with genome assembly/annotation, pangenome analysis, or phylogenetics.
Knowledge of statistical modeling, machine learning, or advanced data visualization.
Prior mentoring or teaching experience in computational skills.
Responsibilities:
Perform computational analysis on collaborative research projects.
Manage, analyze, and interpret large-scale genomic and transcriptomic datasets.
Apply established analytical tools, develop custom pipelines, and create new computational approaches to address cutting-edge biological questions.
Train and assist graduate students with bioinformatics projects.
Maintain lab computing infrastructure.
Maintain and curate genomics datasets, laboratory software with version control, and manage computing clusters and backup storage.
Other duties as assigned.
About Syracuse University:
Syracuse University is a private, international research university with distinctive academics, diversely unique offerings, and an undeniable spirit. Located in the geographic heart of New York State, with a global footprint, and over 150 years of history, Syracuse University offers a quintessential college experience.
The scope of Syracuse University is a testament to its strengths: a pioneering history dating back to 1870; a choice of more than 200 majors, 100 minors, and 200 advanced degree programs offered across the Universitys 13 schools and colleges; over 15,000 undergraduates and over 6,000 graduate students; more than a quarter of a million alumni in 160 countries; and a student population from all 50 U.S. states and 123 countries. For more information, please visit http://www.syracuse.edu.
About the Syracuse area:
Syracuse is a medium-sized city situated in the geographic center of New York State approximately 250 miles northwest of New York City. The metro-area population totals approximately 500,000. The area offers a low cost of living and provides many social, cultural, and recreational options, including parks, museums, festivals, professional regional theater, and premier shopping venues. Syracuse and Central New York present a wide range of seasonal recreation and attractions ranging from water skiing and snow skiing, hiking in the Adirondacks, touring the historic sites, visiting wineries along the Finger Lakes, and biking on trails along the Erie Canal.
Syracuse University is an equal-opportunity institution. The University prohibits discrimination and harassment based on race, color, creed, religion, sex, gender, national origin, citizenship, ethnicity, marital status, age, disability, sexual orientation, gender identity and gender expression, veteran status, or any other status protected by applicable law to the extent prohibited by law. This nondiscrimination policy covers admissions, employment, and access to and treatment in University programs, services, and activities.
Syracuse University has a long history of engaging veterans and the military-connected community through its educational programs, community outreach, and employment programs. After World War II, Syracuse University welcomed more than 10,000 returning veterans to our campus, and those veterans literally transformed Syracuse University into the national research institution it is today. The Universitys contemporary commitment to veterans builds on this historical legacy, and extends to both class-leading initiatives focused on making an SU degree accessible and affordable to the post-9/11 generation of veterans, and also programs designed to position Syracuse University as the employer of choice for military veterans, members of the Guard and Reserve, and military family members.
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Syracuse University is a place where talent, desire, and opportunity thrive. In 12 different schools and colleges that span the liberal arts and professional disciplines, students, faculty, and staff from diverse backgrounds come together to learn, create, and break boundaries.
The University is also a vital part of the community, providing services as well as being a leader in employee benefits, work-life and organizational development, training, student employment, staff relations, and workforce diversity.
Syracuse itself is located at the crossroads of New York State, and offers a lush landscape of seasons. From fun-filled summers in the Finger Lakes to snowy winters that thrill outdoor sports enthusiasts, the area truly has something for everyone.